PlateletWeb - Systems Biology Workbench

About

PlateletWeb is a comprehensive data resource about the platelet proteome, phosphoproteome, kinome, transcriptome and interactome enhanced with information on protein function, GO terms, drug targets and genetic diseases.

References

	Cytoscape Shannon, P., A. Markiel, et al. (2003). "Cytoscape: a software environment for integrated models of biomolecular interaction networks." Genome Res 13(11): 2498-504.
	DrugBank Wishart, D. S., C. Knox, et al. (2008). "DrugBank: a knowledgebase for drugs, drug actions and drug targets." Nucleic Acids Res 36(Database issue): D901-6.
	Embl Cochrane, G. R. and M. Y. Galperin "The 2010 Nucleic Acids Research Database Issue and online Database Collection: a community of data resources." Nucleic Acids Res 38(Database issue): D1-4.
	Gene Ontology Ashburner, M., C. A. Ball, et al. (2000). "Gene ontology: tool for the unification of biology. The Gene Ontology Consortium." Nat Genet 25(1): 25-9.
	HGNC Bruford, E. A., M. J. Lush, et al. (2008). "The HGNC Database in 2008: a resource for the human genome." Nucleic Acids Res 36(Database issue): D445-8.
	HPRD Keshava Prasad, T. S., R. Goel, et al. (2009). "Human Protein Reference Database--2009 update." Nucleic Acids Res 37(Database issue): D767-72.
	IGraph Csardi G, Nepusz T: The igraph software package for complex network research, InterJournal, Complex Systems 1695. 2006
	KEGG Kanehisa, M., S. Goto, et al. "KEGG for representation and analysis of molecular networks involving diseases and drugs." Nucleic Acids Res 38(Database issue): D355-60.
	NCBI Maglott, D., J. Ostell, et al. (2007). "Entrez Gene: gene-centered information at NCBI." Nucleic Acids Res 35(Database issue): D26-31.
	NetworKIN Miller, M. L., L. J. Jensen, et al. (2008). "Linear motif atlas for phosphorylation-dependent signaling." Sci Signal 1(35): ra2.
	OMIM McKusick, V.A.: Mendelian Inheritance in Man. A Catalog of Human Genes and Genetic Disorders. Baltimore: Johns Hopkins University Press, 1998 (12th edition).
	PhosphoSitePlus Hornbeck, P. V., I. Chabra, et al. (2004). "PhosphoSite: A bioinformatics resource dedicated to physiological protein phosphorylation." Proteomics 4(6): 1551-61.
	R R Development Core Team (2008). "R: A Language and Environment for Statistical Computing."
	SMART Ponting, C. P., J. Schultz, et al. (1999). "SMART: identification and annotation of domains from signalling and extracellular protein sequences." Nucleic Acids Res 27(1): 229-32.
	Uniprot "The Universal Protein Resource (UniProt) in 2010." Nucleic Acids Res 38(Database issue): D142-8.
	TMHMM Server version 2.0 Sonnhammer, E. L., G. von Heijne, et al. (1998). "A hidden Markov model for predicting transmembrane helices in protein sequences." Proc Int Conf Intell Syst Mol Biol 6: 175-82.
	Advanced Pathway Painter http://pathway.painter.gsa-online.de/#