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Search for a specific protein in the Platelet Interactome


(Example: vasp)

 

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Get detailed protein information focusing on various characteristics and extract interaction networks

 

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About

Tutorial

  1. Where do I begin?
  2. Where does the data come from?
  3. Description of the proteins
  4. Phosphorylation and kinase information
  5. How to optimally use advanced search options?
  6. How to extract subnetworks for proteins of interest and download files to visualize in Cytoscape?
  7. Images not printing when trying to print. What do I do?
  8. Still having questions! What do I do?

2. Where does the data come from?


The data in the PlateletWeb was assembled from the following sources:

  • The latest proteome and phosphoproteome platelet studies***
  • Human protein database (HPRD) Version 9.0
  • PhosphoSitePlus (extracted December 2010)
  • Interactome databases NCBI, BioGRID and BIND
  • Literature-derived manually extracted information
  • DrugBank
  • Gene Ontology
  • KEGG
  • SMART
*** This information can be found for each protein under "Platelet Evidence" part of the protein description table. There is also a link to the studies, from which the protein is extracted.

For further information, click here

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